PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000081.1_g00015.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 342aa MW: 37531.4 Da PI: 8.6414

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000081.1_g00015.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178	2.6e-55	10	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhPtdeel+++yL +k+++ +++ ++i +vd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+t Itr_sc000081.1_g00015.1 10 LPPGFRFHPTDEELITFYLVNKISDAGFTA-RAIGDVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTT 94 79***********************999.89***********99999***************************** PP NAM 87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 gkdke++++ ++elvg+kktLvfy+grap+gekt+Wvmheyr+ Itr_sc000081.1_g00015.1 95 GKDKEIFNSsTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRI 137 ***9878889*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.26E-64	7	159	IPR003441	NAC domain
PROSITE profile	PS51005	61.223	10	159	IPR003441	NAC domain
Pfam	PF02365	2.3E-28	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MEGELKEESL PPGFRFHPTD EELITFYLVN KISDAGFTAR AIGDVDLNKC EPWDLPGKAK 60 MGEKEWYFFS LRDRKYPTGV RTNRATNTGY WKTTGKDKEI FNSSTSELVG MKKTLVFYRG 120 RAPRGEKTNW VMHEYRIHSK SSYRTNKQDE WVVCRVFQKS AGAKKYPSNH SRAVNPYTLE 180 IGPSMMSSQM IPPDHGFHFA MAAPPGRNPA AAAYITPAEM QEFNRVFRGG GGATSAAINF 240 PIHQPHQMNY PMGPPGAAGA GTGCFTISGL NLNLGGSGGS ASSQAVLRPM PPPPTPPTGM 300 AQADVLTSCE AAGYVAGDMG NPANRYMGMD QCADLDNYWP TY

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MEGELKEESL PPGFRFHPTD EELITFYLVN KISDAGFTAR AIGDVDLNKC EPWDLPGKAK  60
MGEKEWYFFS LRDRKYPTGV RTNRATNTGY WKTTGKDKEI FNSSTSELVG MKKTLVFYRG  120
RAPRGEKTNW VMHEYRIHSK SSYRTNKQDE WVVCRVFQKS AGAKKYPSNH SRAVNPYTLE  180
IGPSMMSSQM IPPDHGFHFA MAAPPGRNPA AAAYITPAEM QEFNRVFRGG GGATSAAINF  240
PIHQPHQMNY PMGPPGAAGA GTGCFTISGL NLNLGGSGGS ASSQAVLRPM PPPPTPPTGM  300
AQADVLTSCE AAGYVAGDMG NPANRYMGMD QCADLDNYWP TY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4dul_B	2e-57	5	165	12	171	NAC domain-containing protein 19
4dul_A	2e-57	5	165	12	171	NAC domain-containing protein 19
1ut7_B	2e-57	5	165	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-57	5	165	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-57	5	165	12	171	NO APICAL MERISTEM PROTEIN
1ut4_A	2e-57	5	165	12	171	NO APICAL MERISTEM PROTEIN
3swp_D	3e-57	5	165	15	174	NAC domain-containing protein 19
3swp_C	3e-57	5	165	15	174	NAC domain-containing protein 19
3swp_B	3e-57	5	165	15	174	NAC domain-containing protein 19
3swp_A	3e-57	5	165	15	174	NAC domain-containing protein 19
3swm_D	3e-57	5	165	15	174	NAC domain-containing protein 19
3swm_C	3e-57	5	165	15	174	NAC domain-containing protein 19
3swm_B	3e-57	5	165	15	174	NAC domain-containing protein 19
3swm_A	3e-57	5	165	15	174	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00277	DAP	Transfer from AT2G24430	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011082111.1	1e-164	PREDICTED: protein CUP-SHAPED COTYLEDON 3
TrEMBL	A0A068VET3	1e-166	A0A068VET3_COFCA; Uncharacterized protein
STRING	POPTR_0018s03910.1	1e-160	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-103	NAC domain containing protein 38