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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000081.1_g00015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NAC | ||||||||
Protein Properties | Length: 342aa MW: 37531.4 Da PI: 8.6414 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178 | 2.6e-55 | 10 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhPtdeel+++yL +k+++ +++ ++i +vd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+t Itr_sc000081.1_g00015.1 10 LPPGFRFHPTDEELITFYLVNKISDAGFTA-RAIGDVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTT 94 79*************************999.89***************99999********************************* PP NAM 87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 gkdke++++ ++elvg+kktLvfy+grap+gekt+Wvmheyr+ Itr_sc000081.1_g00015.1 95 GKDKEIFNSsTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRI 137 *******9878889***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.26E-64 | 7 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.223 | 10 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-28 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MEGELKEESL PPGFRFHPTD EELITFYLVN KISDAGFTAR AIGDVDLNKC EPWDLPGKAK 60 MGEKEWYFFS LRDRKYPTGV RTNRATNTGY WKTTGKDKEI FNSSTSELVG MKKTLVFYRG 120 RAPRGEKTNW VMHEYRIHSK SSYRTNKQDE WVVCRVFQKS AGAKKYPSNH SRAVNPYTLE 180 IGPSMMSSQM IPPDHGFHFA MAAPPGRNPA AAAYITPAEM QEFNRVFRGG GGATSAAINF 240 PIHQPHQMNY PMGPPGAAGA GTGCFTISGL NLNLGGSGGS ASSQAVLRPM PPPPTPPTGM 300 AQADVLTSCE AAGYVAGDMG NPANRYMGMD QCADLDNYWP TY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4dul_B | 2e-57 | 5 | 165 | 12 | 171 | NAC domain-containing protein 19 |
4dul_A | 2e-57 | 5 | 165 | 12 | 171 | NAC domain-containing protein 19 |
1ut7_B | 2e-57 | 5 | 165 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-57 | 5 | 165 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-57 | 5 | 165 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_A | 2e-57 | 5 | 165 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
3swp_D | 3e-57 | 5 | 165 | 15 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-57 | 5 | 165 | 15 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-57 | 5 | 165 | 15 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-57 | 5 | 165 | 15 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-57 | 5 | 165 | 15 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-57 | 5 | 165 | 15 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-57 | 5 | 165 | 15 | 174 | NAC domain-containing protein 19 |
3swm_A | 3e-57 | 5 | 165 | 15 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00277 | DAP | Transfer from AT2G24430 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011082111.1 | 1e-164 | PREDICTED: protein CUP-SHAPED COTYLEDON 3 | ||||
TrEMBL | A0A068VET3 | 1e-166 | A0A068VET3_COFCA; Uncharacterized protein | ||||
STRING | POPTR_0018s03910.1 | 1e-160 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24430.2 | 1e-103 | NAC domain containing protein 38 |